I found that I did better when I eliminated nightshades. Here's some info:
Tomatoes contain natural toxins that act as natural insecticides and anti-fungal agents: tomato lectin and alpha tomatine. All plant foods contain natural insecticides. The human digestive system has evolved enzymes that break down and thus detoxify some of these plant toxins, but it appears it has not had enough time to develop this adaptation to certain plant foods, such as tomatoes and other nightshades.
"Tomato lectin (TL) is a bioadhesive glycoprotein that has been shown to bind selectively to the small intestine epithelium."
http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T7W-3WMJSNY-3&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=fd27edca692b7072d14f7f8a2ee6bf28Tomato lectin interacts with gastric parietal cells in patients with autoimmune gastritis (see
http://jcs.biologists.org/cgi/content/abstract/95/4/563).
How to Treat Multiple Sclerosis with Diet (multiple videos; one of them covers the role of tomatoes in MS--I don't remember which one specifically)
A presentation by Loren Cordain, Ph.D. [Yes, I know, Cordain is hated--get over the hate or skip the video--your choice] at the request of Ashton Embry, Ph.D. of "Best-Bet" MS diet fame
http://www.youtube.com/watch?v=xhkmDHLCUEs (You can find the whole series of videos at YouTube by searching on "paleo diet ms").
"Of Tomatoes, Vaccines and Autoimmune Disease - Tomatoes are almost universally considered to be healthy foods, though there are anecdotal reports that avoiding consumption of nightshade plants, including tomatoes, may improve symptoms in patients with rheumatoid arthritis and other autoimmune diseases.
In this cutting-edge report you'll learn about a component, tomato lectin, which has the capacity to interact with the immune system in a way that may promote autoimmune disease. You'll also learn about another component of tomato, alpha tomatine, which can act as an adjuvant and boost the immune response to tomato lectin, and also increase gut permeability."
The Role of Lectins from Grains and Legumes in the MS Disease ProcessAshton Embry
http://www.msrc.co.uk/index.cfm?fuseaction=show&pageid=2344 "I want to summarize a number of important points that Dr Cordain made in his presentation. Some of them were new to me and they are most important for understanding why it is essential to avoid eating gluten grains and legumes as well as a few other types of foods including tomatoes. His work has also put the concept of the role of a leaky gut in MS in a new context and this also has ramifications for understanding how potentially problematic food and bacterial-derived protein fragments can cross the intestinal barrier and engage the immune system. Dr Cordain’s presentation is quite technical but to me it is imperative to understand how various proteins derived from foods can be part of the MS disease process on a molecular level. This provides a solid, science-based rationale for WHY it is critical to avoid foods such as legumes and grains if one wants to keep the MS disease process well controlled."