Hi Josh,
As goodsamaritan said, there is inevitably going to be an adjustment period for you - particularly if you've jumped straight into the diet rather than taking gradual steps. If you didn't do so, it may also have been wise to initiate the new direction with a period of fasting to help cleanse & prepare your digestive system.
I've been eating RAF for 8 years now with my current paleo diet following on from 4 years of my own version of Aajonus's Primal diet. I have no problems digesting vast quantities of meats despite still eating small amounts of fresh herbs, onion, peppers, garlic etc. It may be wise to take it slowly as introducing radical dietary changes to the body will always have consequences such as those you've experienced.
I would add, however, that the closer I move towards the zero-carb diet of meat, fat & water and the less fruit/veg I consume, the better my digestion becomes. Perhaps if zero-carb was your goal then, in answer to your question, yes - you probably are delaying the inevitable regarding adapting to putrefactive digestion. Personally though, I'm not intellectually or spiritually convinced that humans are supposed to be pure carnivores and I believe small quantities of selected fruit/veg/nuts are valid natural foods. In such a scenario, I wouldn't envisage a digestive system capable only of putrefactive digestion as an asset. Surely we were hunter/GATHERERS which meant we could benefit in the survival stakes from an adaptive digestive system.
