Tyler, Yes, there is individual variation, in not just the DNA of our flesh, but also the majority of our DNA, which is in our microbes. Meat and connective tissue bacteria probably do help make VLC more tolerable for some, including traditional Eskimos. I suspect that this is one reason that rawists tend to be able to stay VLC longer than cooked foodists. Many cooked VLCers seem to be attracted to it by the prospect of being given the OK to eat all the crispy-fried bacon, cooked sausage and pasteurized butter they want. Thus, they tend to be even more anti-raw than vegans and vegetarians.
As Eric pointed out before, the so-called "high-meat" based on Aajonus' recommendations is not how the Eskimos make it, so perhaps authentic Eskimo high meat would help more. Maybe other traditional Eskimo foods, like muktuk (such as the narwhal skin you mentioned), raw seal liver, raw and briefly-cooked Eskimo potatoes, raw caribou liver and stomach contents, fermented birds, stinkflipper, stink heads, wild berries, tree saps, barks and teas, etc. (varying by availability in different regions, of course) helped the Eskimoes to avoid much of the longer-term problems that modern people report on raw and cooked VLC diets.
Ironically, I didn't have as poor early results from VLC early on as you did, which unfortunately contributed to my staying VLC for too long, thinking it was safe, even if not necessarily optimal, until it gradually became clear that it wasn't working well for me in the longer run, and I eventually found some ways to do better (though it took time).
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Van, Yes, the beneficial bacteria that feed on meats are likely different from those that feed on plant foods. They probably all help in some way to get through the intermittent fasts and lean times. Yes, it does seem that the most extreme VLCers who cut all vegetable, fruit, sea vegs. and vit. C sources tend to fare worst. The Eskimos never did that. It's strange that they use the Eskimos to support doing things that the Eskimos themselves would never do. Even when I was VLC, I didn't understand why some people assumed they could get just as good results as the Eskimos eating nothing but Walmart ground beef and water (and maybe some butter), like our past active member, Katelyn, who later dumped VLC.
I suspect that many of the improvements that many people experience after dramatic dietary changes are mainly due to changes in their microbiota. It will be interesting to see what future research finds.